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Protein Hydrolysis freeware
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Protein Hydrolysis

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Added: April 24, 2013 | Visits: 266

MATLAB Contest Protein This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...



Platforms: Matlab

License: Freeware Size: 10 KB Download (20): MATLAB Contest Protein Download

Added: August 25, 2013 | Visits: 214

HOPPscore - Protein Structure Quality HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...





Platforms: *nix

License: Freeware Size: 2.29 MB Download (16): HOPPscore - Protein Structure Quality Download

Released: August 30, 2010  |  Added: September 03, 2010 | Visits: 4.776

Advanced Pathway Painter This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment...


Platforms: Windows

License: Freeware Size: 4.54 MB Download (294): Advanced Pathway Painter Download

Added: August 18, 2008 | Visits: 1.219

CLC Protein Workbench CLC Protein Workbench is a scientific application for bioinformation, aimed at the advanced analysis of protein sequences. This program offers you a really wide range of analyses, all of them integrated in the same interface, which is very friendly and accessible to all users.The options and...


Platforms: Windows

License: Freeware Size: 5 KB Download (140): CLC Protein Workbench Download

Added: March 27, 2010 | Visits: 1.116

Bio::Tools::Run::TribeMCL Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...


Platforms: *nix

License: Freeware Size: 829.44 KB Download (168): Bio::Tools::Run::TribeMCL Download

Added: January 25, 2010 | Visits: 620

Protein BLAST Widget Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.


Platforms: Mac

License: Freeware Download (80): Protein BLAST Widget Download

Released: July 11, 2012  |  Added: July 11, 2012 | Visits: 270

ProtAnnot ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll


Platforms: Windows

License: Freeware Download (42): ProtAnnot Download

Released: June 03, 2012  |  Added: June 03, 2012 | Visits: 398

GPS The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution. GPS is a Java software, so it runs on multiple platforms,...


Platforms: Windows

License: Freeware Download (43): GPS Download

Released: July 13, 2012  |  Added: July 13, 2012 | Visits: 352

TMRPres2D TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and...


Platforms: Windows

License: Freeware Download (47): TMRPres2D Download

Released: August 08, 2012  |  Added: August 08, 2012 | Visits: 350

CLC Main Workbench Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis. CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...


Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64

License: Freeware Download (47): CLC Main Workbench Download

Released: January 10, 2013  |  Added: January 10, 2013 | Visits: 313

Protein Skimmer Puzzle Fun Puzzle That Creates A Picture Of A Protein Skimmer


Platforms: Windows

License: Freeware Size: 293 KB Download (27): Protein Skimmer Puzzle Download

Released: July 03, 2012  |  Added: July 03, 2012 | Visits: 219

Whey Protein Review Desktop Alert This is a very easy to use desktop application that will alert you whenever new articles are added to Whey Protein Review.com. Simply install the software and any time new content is added to the website, you will receive an alert on your desktop letting you know, and showing you part of the...


Platforms: Windows

License: Freeware Size: 656 KB Download (27): Whey Protein Review Desktop Alert Download

Released: August 09, 2012  |  Added: August 09, 2012 | Visits: 301

GRaPe - Gene Reaction Protein Builder GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.


Platforms: Windows, Mac, Linux

License: Freeware Size: 3.62 MB Download (27): GRaPe - Gene Reaction Protein Builder Download

Released: November 25, 2012  |  Added: November 25, 2012 | Visits: 436

Protein Data Bank (PDB) File Editor User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files


Platforms: Windows, Mac, Linux

License: Freeware Size: 731.14 KB Download (29): Protein Data Bank (PDB) File Editor Download

Released: July 03, 2012  |  Added: July 03, 2012 | Visits: 263

Protein Geometry Database The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.


Platforms: Windows, Mac, Linux

License: Freeware Size: 96.13 KB Download (29): Protein Geometry Database Download

Released: December 01, 2012  |  Added: December 01, 2012 | Visits: 249

protein-ms Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files


Platforms: Windows, Mac, Linux

License: Freeware Size: 2.43 MB Download (28): protein-ms Download

Released: June 27, 2012  |  Added: June 27, 2012 | Visits: 212

Visualization of Protein-Ligand Graphs The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm.


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 6.6 MB Download (29): Visualization of Protein-Ligand Graphs Download

Added: March 24, 2013 | Visits: 252

MGWT MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab

License: Freeware Size: 51.2 KB Download (21): MGWT Download

Added: April 16, 2013 | Visits: 204

unfoldprotein.m UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD...


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): unfoldprotein.m Download

Added: July 12, 2013 | Visits: 173

MATLAB Contest - Protein The sixth MATLAB Programming Contest, Protein, will run from November 6-13, 2002.This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded"...


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): MATLAB Contest - Protein Download

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